Journal of Clinical and Diagnostic Research, ISSN - 0973 - 709X

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MBBS, MD (Pathology),
Sanjay Gandhi institute of trauma and orthopedics,
Bengaluru.
On Aug 2018




Dr. Mamta Gupta,
"It gives me great pleasure to be associated with JCDR, since last 2-3 years. Since then I have authored, co-authored and reviewed about 25 articles in JCDR. I thank JCDR for giving me an opportunity to improve my own skills as an author and a reviewer.
It 's a multispecialty journal, publishing high quality articles. It gives a platform to the authors to publish their research work which can be available for everyone across the globe to read. The best thing about JCDR is that the full articles of all medical specialties are available as pdf/html for reading free of cost or without institutional subscription, which is not there for other journals. For those who have problem in writing manuscript or do statistical work, JCDR comes for their rescue.
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Reviewing articles is no less a pain staking process and requires in depth perception, knowledge about the topic for review. It requires time and concentration, yet I enjoy doing it. The JCDR website especially for the reviewers is quite user friendly. My suggestions for improving the journal is, more strict review process, so that only high quality articles are published. I find a a good number of articles in Obst. Gynae, hence, a new journal for this specialty titled JCDR-OG can be started. May be a bimonthly or quarterly publication to begin with. Only selected articles should find a place in it.
An yearly reward for the best article authored can also incentivize the authors. Though the process of finding the best article will be not be very easy. I do not know how reviewing process can be improved. If an article is being reviewed by two reviewers, then opinion of one can be communicated to the other or the final opinion of the editor can be communicated to the reviewer if requested for. This will help one’s reviewing skills.
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Dr. Mamta Gupta
Consultant
(Ex HOD Obs &Gynae, Hindu Rao Hospital and associated NDMC Medical College, Delhi)
Aug 2018




Dr. Rajendra Kumar Ghritlaharey

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Writing is the representation of language in a textual medium i e; into the words and sentences on paper. Quality medical manuscript writing in particular, demands not only a high-quality research, but also requires accurate and concise communication of findings and conclusions, with adherence to particular journal guidelines. In medical field whether working in teaching, private, or in corporate institution, everyone wants to excel in his / her own field and get recognised by making manuscripts publication.


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Salient features of the JCDR: It is a biomedical, multidisciplinary (including all medical and dental specialities), e-journal, with wide scope and extensive author support. At the same time, a free text of manuscript is available in HTML and PDF format. There is fast growing authorship and readership with JCDR as this can be judged by the number of articles published in it i e; in Feb 2007 of its first issue, it contained 5 articles only, and now in its recent volume published in April 2011, it contained 67 manuscripts. This e-journal is fulfilling the commitments and objectives sincerely, (as stated by Editor-in-chief in his preface to first edition) i e; to encourage physicians through the internet, especially from the developing countries who witness a spectrum of disease and acquire a wealth of knowledge to publish their experiences to benefit the medical community in patients care. I also feel that many of us have work of substance, newer ideas, adequate clinical materials but poor in medical writing and hesitation to submit the work and need help. JCDR provides authors help in this regards.
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Indexation and online availability: Indexation transforms the journal in some sense from its local ownership to the worldwide professional community and to the public.JCDR is indexed with Embase & EMbiology, Google Scholar, Index Copernicus, Chemical Abstracts Service, Journal seek Database, Indian Science Abstracts, to name few of them. Manuscriptspublished in JCDR are available on major search engines ie; google, yahoo, msn.
In the era of fast growing newer technologies, and in computer and internet friendly environment the manuscripts preparation, submission, review, revision, etc and all can be done and checked with a click from all corer of the world, at any time. Of course there is always a scope for improvement in every field and none is perfect. To progress, one needs to identify the areas of one's weakness and to strengthen them.
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Every one of us: authors, reviewers, editors, and publisher are responsible for enhancing the stature of the journal. I wish for a great success for JCDR."



Thanking you
With sincere regards
Dr. Rajendra Kumar Ghritlaharey, M.S., M. Ch., FAIS
Associate Professor,
Department of Paediatric Surgery, Gandhi Medical College & Associated
Kamla Nehru & Hamidia Hospitals Bhopal, Madhya Pradesh 462 001 (India)
E-mail: drrajendrak1@rediffmail.com
On May 11,2011




Dr. Shankar P.R.

"On looking back through my Gmail archives after being requested by the journal to write a short editorial about my experiences of publishing with the Journal of Clinical and Diagnostic Research (JCDR), I came across an e-mail from Dr. Hemant Jain, Editor, in March 2007, which introduced the new electronic journal. The main features of the journal which were outlined in the e-mail were extensive author support, cash rewards, the peer review process, and other salient features of the journal.
Over a span of over four years, we (I and my colleagues) have published around 25 articles in the journal. In this editorial, I plan to briefly discuss my experiences of publishing with JCDR and the strengths of the journal and to finally address the areas for improvement.
My experiences of publishing with JCDR: Overall, my experiences of publishing withJCDR have been positive. The best point about the journal is that it responds to queries from the author. This may seem to be simple and not too much to ask for, but unfortunately, many journals in the subcontinent and from many developing countries do not respond or they respond with a long delay to the queries from the authors 1. The reasons could be many, including lack of optimal secretarial and other support. Another problem with many journals is the slowness of the review process. Editorial processing and peer review can take anywhere between a year to two years with some journals. Also, some journals do not keep the contributors informed about the progress of the review process. Due to the long review process, the articles can lose their relevance and topicality. A major benefit with JCDR is the timeliness and promptness of its response. In Dr Jain's e-mail which was sent to me in 2007, before the introduction of the Pre-publishing system, he had stated that he had received my submission and that he would get back to me within seven days and he did!
Most of the manuscripts are published within 3 to 4 months of their submission if they are found to be suitable after the review process. JCDR is published bimonthly and the accepted articles were usually published in the next issue. Recently, due to the increased volume of the submissions, the review process has become slower and it ?? Section can take from 4 to 6 months for the articles to be reviewed. The journal has an extensive author support system and it has recently introduced a paid expedited review process. The journal also mentions the average time for processing the manuscript under different submission systems - regular submission and expedited review.
Strengths of the journal: The journal has an online first facility in which the accepted manuscripts may be published on the website before being included in a regular issue of the journal. This cuts down the time between their acceptance and the publication. The journal is indexed in many databases, though not in PubMed. The editorial board should now take steps to index the journal in PubMed. The journal has a system of notifying readers through e-mail when a new issue is released. Also, the articles are available in both the HTML and the PDF formats. I especially like the new and colorful page format of the journal. Also, the access statistics of the articles are available. The prepublication and the manuscript tracking system are also helpful for the authors.
Areas for improvement: In certain cases, I felt that the peer review process of the manuscripts was not up to international standards and that it should be strengthened. Also, the number of manuscripts in an issue is high and it may be difficult for readers to go through all of them. The journal can consider tightening of the peer review process and increasing the quality standards for the acceptance of the manuscripts. I faced occasional problems with the online manuscript submission (Pre-publishing) system, which have to be addressed.
Overall, the publishing process with JCDR has been smooth, quick and relatively hassle free and I can recommend other authors to consider the journal as an outlet for their work."



Dr. P. Ravi Shankar
KIST Medical College, P.O. Box 14142, Kathmandu, Nepal.
E-mail: ravi.dr.shankar@gmail.com
On April 2011
Anuradha

Dear team JCDR, I would like to thank you for the very professional and polite service provided by everyone at JCDR. While i have been in the field of writing and editing for sometime, this has been my first attempt in publishing a scientific paper.Thank you for hand-holding me through the process.


Dr. Anuradha
E-mail: anuradha2nittur@gmail.com
On Jan 2020

Important Notice

Original article / research
Year : 2023 | Month : June | Volume : 17 | Issue : 6 | Page : GC01 - GC04 Full Version

A Pilot Study on Presence of Parkinson’s Disease Risk Gene PARK7 in Population of West Bengal, India: A Preliminary Observation


Published: June 1, 2023 | DOI: https://doi.org/10.7860/JCDR/2023/62023.18100
Debasmita Chatterjee, Krishnendu Paira, Banhishikha Singh, Satadal Das

1. Assistant Professor, Department of Biotechnology, Heritage Institute of Technology, Kolkata, West Bengal, India. 2. Chief Coordinator, Department of Biotechnology, Heritage Institute of Technology, Kolkata, West Bengal, India. 3. Assistant Professor, Department of Biotechnology, Heritage Institute of Technology, Kolkata, West Bengal, India. 4. Principal Scientist, Department of Biotechnology, Heritage Institute of Technology, Kolkata, West Bengal, India.

Correspondence Address :
Dr. Satadal Das,
Principal Scientist, Department of Biotechnology, Heritage Institute of Technology, Kolkata-700107, West Bengal, India.
E-mail: satadal.das@heritageit.edu

Abstract

Introduction: The neurodegenerative Parkinson’s Disease (PD) is associated with different risk genes along with some environmental factors. Till date, there are few identified genes which play a pivotal role in the early onset of PD among the general population.

Aim: To screen the presence of different risk genes of Parkinson’s disease along with associated environmental factors among randomly selected 62 urban participants.

Materials and Methods: The present randomised control trial single blind pilot study was conducted in the Department of Biotechnology, Heritage Institute of Technology, Kolkata, West Bengal, India, from March 2021 to June 2021. The study participants were informed about the study and blood was collected from them. The genomic Deoxyribonucleic Acid (DNA) extraction was carried out following phenol chloroform extraction protocol and Polymerase Chain Reaction (PCR) was done with specific primers of the risk genes namely, Parkinson Disease 1 (PARK1) Alpha-synuclein (α-synuclein), Parkinson Disease 2 (PARK2) (Parkin), Parkinson Disease Protein 7 (PARK7) or DJ -1 and PINK 1. Protein Deglycase-1 (DJ-1) and PTEN Induced Kinase 1 (PINK1). The statistical analysis of the findings was done using Statistical package for the Social Sciences (SPSS) software version 21.0.

Results: Out of 62 particpants, 47 were males and 15 were females and the age distribution of the participants was in between 21 years to >60 years. After obtaining specific band in agarose gel electrophoresis, 35 positive cases of PARK7 gene and one positive case of PARK2 gene were identified.

Conclusion: There was a statistically significant association of different bacterial and viral infections with the PARK7 gene positive cases. PARK7 gene responsible for early onset of PD is significantly prevalent in the general population of West Bengal.

Keywords

Neurodegenerative disease, Parkinson disease protein 7 gene, Polymerase chain reaction

The condition of “Parkinsonism” is associated with several factors such as risk genes, varied clinical subtypes, and the supposed causative environmental factors (1). In the year 1817, James Parkinson referred this clinical syndrome as “Essay on the shaking palsy”, and later this was known as PD (2). The disease PD is associated with the specific features such as tremor during rest, postural instability, rigidity and bradykinesia. Along with the above mentioned symptoms, the disease is associated with several other motor and non motor symptoms (2).

With the advancement of medical treatment facilities, and with increased life span of the overall population, age related disorders like PD are getting attention from the scientific community (2). There is a lot of existing debate with regard to the association of PD with aetiological factors like lifestyle and environmental and other putative genes responsible for the condition (3). It has been found that the disease is more frequent among the males than females (with ratio ranging between 1.3 to 2) (4). However, the incidence rate is dependent upon varied other factors like smoking behaviour, intake of caffeine, consumption of postmenopausal hormones, exposure to heavy metal or pesticides, living in rural environment, those who have undergone traumatic head injury, having history of type 2 diabetes and melanoma, and many other factors (5),(6),(7).

Alpha-synuclein (SNCA) is considered to have a key role in the development of pathogenesis of PD, however, this particular mutant protein is an infrequent cause of PD. In this regard, other studies have reported that the duplication, triplication and quadriplication of the SNCA protein are associated with the pathogenesis of PD. Moreover, the polymorphic variant in the promoter region of SNCA results in the uprising sporadic cases of PD. The triplication of this particular gene is directly related with early onset of the disease and this is often referred as “gene dosage effect” (7),(8).

Parkin is considered to be the very common autosomal recessive gene (PARK-2) associated protein responsible for PD. Nearly, 50% of the patients who are compound heterozygotes suffer from early onset of PD. Following autopsy, it can be observed that there is substantial loss of neurons within the substantia nigra pars compacta, however, there is well preserved dorsal tier with much less Lewy bodies (7).

The PARK7 or DJ-1 gene is also being referred to as oxidative stress sensor. The protein associated with this gene takes part in the development of oxidative stress related diseases such as cancer, type 2 diabetes, neurodegenerative diseases, and male infertility. Moreover, extensive researches have revealed that DJ-1 gene plays a role in immune and inflammatory disorders. This particular gene was originally being referred as oncogene and the putative gene for autosomal recessive early onset PD. The protein influences the activation of varied immune cells like mast cells, macrophages, T cells via Reactive Oxygen Species (ROS) dependent or independent pathways. The mutation Leucine166 Proline (L166P) in DJ-1 gene, is responsible for the familial occurrence of PD (9).

It is reported that loss of function of PINK 1 gene is the cause of early onset and recessive PD. The mitochondrial serine-threonine protein kinase is encoded by PINK 1 and it also stands beside PARK2 and DJ-1 gene those are responsible for early onset and recessive PD (10). Moreover, interestingly some researchers have claimed that there is an indirect association in between bacterial or viral infection with the development of PD (11),(12),(13),(14). Researcher has shown an important association in between Hepatitis C Virus (HCV) infection and risk of PD development with the aid of epidemiological study and also with Helicobacter pylori infection (15),(16). Thus, in this present study, the prevalence of four genes discussed above namely PARK1, PARK2 and PARK7 and PINK 1 were screened among randomly selected 62 healthy volunteers.

Material and Methods

The present randomised control trial single blind pilot study was conducted in the Department of Biotechnology, Heritage Institute of Technology, Kolkata, West Bengal, India, from March 2021 to June 2021. The study was approved by the Institutional Ethical Committee (HIT/ IEC/2020/001/2021) and the entire study was conducted maintaining the ethical regulations as per the revised guidelines of Helsinki Declaration, 2013. The participants were informed in detail about the research investigation, about their participation and were asked to give their consent in the informed consent forms. Study was conducted with 62 adult participants selected randomly. The participants were randomly selected individuals of Heritage Institute of Technology. residents. An advertisement was mailed to all of the individuals of the Heritage Institute of Technology detailing about the significance of the research investigation and were asked to enroll for the research study, if they are willing to participate.

Inclusion and exclusion criteria: Urban residents who agreed to participate in the study after signing the informed consent following listening to the details and significance of the research investigation were included in the study. Patients who did not give consent to participate in the study were excluded from the study.

Study Procedure

The study particpants were detailed about their rights to participation in a clinical investigation. They are randomly selected individuals of general population not patients of PD. Few of the study participants had history of Parkinsonism or other neurological disease which were also recorded. Family members were considered those who were in the blood relation with the study participants of the present research investigation. Predefined clinical details were recorded of each participant along with past history, and family history. The entire procedure was carried out in the presence of expert professionals. The blood collection was done by a trained phlebotomist for the adult participants.

The volunteers were asked to fill up detailed questionnaire with respect to their previous clinical symptoms, family history, and medicinal history, if any. A medical professional and Assistant Professor of Department of Biotechnology, took all the detailed demographical, medical and family history of all the participants, who finally agreed to participate in the present research investigation.

Blood sample collection: A 2 mL of the venous blood was collected from each participant in an Ethylenediaminetetraacetic Acid (EDTA) coated sterile blood vial. Before the collection of the blood, the participants stated their full name and the informed consent were matched. After collection the vials were marked with the patient code and initial name of the participants for the future follow-up and laboratory examination. The vials were then transferred in cooled pack so that there was no haemolysis. The blood was then centrifuged at 1200 rpm for five minutes for the separation of the plasma. Then the plasma was separated carefully into sterile 1.5 mL cryovials and stored at -80°C deep freezer for future experimental purpose. The cryo-vials were marked with the patient code for the future identification purpose.

Genomic DNA extraction: The genomic DNA extraction was carried out using the phenol chloroform extraction protocol (11). The eluted DNA was dissolved in 60 μL of elution buffer and the quantification of the isolated DNA was done using A260/280 ratio with an Ultraviolet–visible spectroscopy (UV-Vis) spectrophotometer (Agilent, Malaysia). The absorbance for pure DNA was considered to be 1.8. Lower absorbance of any sample below 1.8 was considered to be contaminated with proteins and phenols.

PCR reactions and condition: After the extraction of genomic DNA, the conventional PCR (Bio-Rad, T-100, USA) was performed maintaining the following reaction conditions mentioned below in the (Table/Fig 1). The forward and reverse sequences of the selected primers are tabulated below in (Table/Fig 2). The PCR products were run through 1.5% agarose gel at 80 mV for 30 minutes and then visualised under UV transilluminator to observe the bands. A 100 bp molecular marker was kept as positive control during the gel electrophoresis procedure.

Statistical Analysis

The statistical analysis of the findings was done using SPSS software version 21.0. The correlation and association study was done and the result was considered significant at p-value <0.05.

Results

The age distribution of the participants was in between 21 years to >60 years (Table/Fig 3). It has been observed that among 47 (75.80%) male volunteers, 25 (24.19%) of them were positive for PARK7 gene and among them only one volunteer was also positive for PARK2 gene (Table/Fig 4). Among the 15 female volunteers, 10 cases were found to be positive (Table/Fig 4). In the (Table/Fig 5), the age-wise distribution of participants and the number of positive cases of PARK7 are mentioned. The agarose gel electrophoresis image (Table/Fig 6) depicted the positive sample of PARK7 or DJ-1 gene of 24 kb containing eight exons and the protein coded by this gene comprises of 189 amino acids (12). There was significant association obtained in between different communicable diseases like chicken pox, typhoid, malaria, mumps, jaundice and measles with the PARK7 gene as obtained from their clinical history (p-value=0.0048) (Table/Fig 7). Similarly significant association was also obtained with the any injuries/surgeries and different diseases associated with the family members of the volunteers such as diabetes, hypertension, cardiovascular disease, cancer, neurological disorders, urological disorders, asthma and arthritis (Table/Fig 8),(Table/Fig 9).

Discussion

Literature studies have revealed that there is an association in between age and onset of PD among patients depending on mutations observed among DJ-1 or PARK7 and PINK 1 genes (15). Researchers have reported about the onset of the disease before the age of 40 years. The symptoms of the disease such as bradykinesia, postural tremor, failure of postural reflexes, along with psychological symptoms appeared among the patients; however, the progression of the disease was found to be dawdling (15). Similarly, other researchers also stated that there is strong association between PD and age of the study population (17). It was reported that the frequency was 11.8% for people who are less than equal to 75 years, for age range in between 75-84 years, the frequency was within 29.1% and it was 43.7% for those above 85 years. In the pilot study, authors have found there were seven PARK7 (58.33%) gene positive cases among 12 persons within the age range of 31-40 years, among 26 participants, there were 16 positive cases (61.53%) for the age range within 41 to 50 years, 8 (50%) cases were positive among 16 participants within the age range of 51-60 years, and 3 (50%) cases were positive among six participants who are above 60 years (17). With regard to the association of PD with gender, researchers have already reported that PD is found to be 1.5 times more common among males when compared to females (18). They also stated that pitiable performance of cognitive variables such as processing speed and executive function was found to be more among males than females. The present study found that among the females the preclinical symptomatic manifestations are delayed and develops more of a benign PD tremor dominant TD (Tandem Duplicato) phenotype (18). However, in the current study population comprised of 47 males and 15 females and among them 25 (54.34%) and 10 (66.66%) cases were positive for PARK7 gene, respectively. The difference in observation is due to the unequal division among the male and female number of participants due to which the positive cases are getting overhyped.

Manifestations of PD can be both due to genetic and environmental factors (13). Some researchers have claimed that there is an indirect association in between bacterial or viral infection with the development of PD (11),(12). One study has shown an important association in between Hepatitis C Virus (HCV) infection and risk of PD development with the aid of epidemiological study and also with Helicobacter pylori infection (15). The study also showed association of PD risk due to the infection and its response to levadopa. The explanation behind the association as provided by scientist is that infectious agents such as viruses and certain bacteria have neurotropic effects such as specifically susceptibility of the substantia nigra and also the encouragement of aggregation of Alpha-synuclein (α-SNCA) (15). In the present study, also there was a statistically significant association of different bacterial and viral infections such as chicken pox, typhoid, malaria, mumps, jaundice and measles with the PARK7 gene positive cases (p-value=0.0048). The disease manifestations is considered to be due to the complicated interplay of variable factors (both environmental and genetic) that culminates to the development of PD. Certain environmental factors that have been highly inversely associated with the development of PD are cigarette smoking, exposure to pesticides, intake of caffeine, strenuous physical activity, and plasma urate, physical and emotional trauma, and also dietary components (14),(16),(17),(18),(19). In 1918, postencephalitic PD has been reported following influenza pandemic and the disease has been recognised as encephalitis lethargica (15). Therefore, viruses which are effectively neurotropic might be responsible for PD. Moreover, the “multiple microbe” hypothesis also claimed that risk of developing PD is more among the population who have suffered disease due to infection of the following agents such as Herpes simplex virus-1 (HSV-1), Epstein-Barr virus (EBV), Cytomegalovirus (CMV), Chlamydia pneumoniae (C.pneumoniae), Borrelia burgdorferi (B.burgdorferi) and Helicobacter pylori (H.pylori) in comparison to healthy controls (15). In the present study, there was a significant association in between various non communicable diseases that the family members of the participants have suffered and the positive cases of PARK7 gene. In this respect several authors have varied opinions where there is inverse association of PD and different forms of cancer cases. However, the association is direct between positive PD cases and different cardiovascular problems such as myocardial infarction, Chronic Heart Failure (CHF), ischemic stroke and several other symptoms (20).

Limitation(s)

As it was a pilot study, authors did not include all the relevant points, such as smoking behaviour, intake of caffeine, consumption of postmenopausal hormones, exposure to heavy metal or pesticides, living in rural environment, in the present research investigation.

Conclusion

The gene PARK7, responsible for early onset of PD was significantly prevalent in the general population of West Bengal, India. Though many factors were considered in details, within this pilot study, however all the mentioned points within the limitations of the study will be considered in the final study with a larger sample size.

Authors contribution: DC has carried out the entire experimental process and written the manuscript. KP and DC have obtained the demographical and clinical details of each participant. BS has also participated in the experimental analysis. SD has planned up the entire experiment, analysed the experimental findings and checked the final manuscript.

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DOI and Others

DOI: 10.7860/JCDR/2023/62023.18100

Date of Submission: Dec 02, 2022
Date of Peer Review: Dec 13, 2022
Date of Acceptance: Mar 11, 2023
Date of Publishing: Jun 01, 2023

AUTHOR DECLARATION:
• Financial or Other Competing Interests: None
• Was Ethics Committee Approval obtained for this study? Yes
• Was informed consent obtained from the subjects involved in the study? Yes
• For any images presented appropriate consent has been obtained from the subjects. NA

PLAGIARISM CHECKING METHODS:
• Plagiarism X-checker: Dec 05, 2022
• Manual Googling: Feb 22, 2023
• iThenticate Software: Mar 08, 2023 (5%)

ETYMOLOGY: Author Origin

EMENDATIONS: 6

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